BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB020A08SP1|AL427560
(1075 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig933 1604 0.0
>3x_Contig933
Length = 3686
Score = 1604 bits (800), Expect = 0.0
Identities = 856/880 (97%), Gaps = 4/880 (0%)
Strand = Plus / Minus
Query: 1 gatcaagcagctggwattgtaaatctgttgaatagttaggattttggtagaagagagcag 60
|||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 891 gatcaagcagctggtattgtaactctgttgaatagttaggattttggtggaagagagcag 832
Query: 61 tggaatwcctgctacgaaaataatcgagcctactgaaactatgtctaatgcaaccaagtc 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tggaattcctgctacgaaaataatcgagcctactgaaactatgtctaatgcaaccaagtc 772
Query: 121 caatgatgcgtcgcccttcatcaagagggatcaratdabacgggagttcttgagagcaag 180
||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||
Sbjct: 771 caatgatgcgtcgcccttcatcaagagggatcagatgagaagggagttcttgagagcaag 712
Query: 181 acaaaggagtaacaatccgaagcctatagtaaagamagaggatcccgaacaagctgcaga 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 711 acaaaggagtaacaatccgaagcctatagtaaagaaagaggatcccgaacaagctgcaga 652
Query: 241 agaggctaggaagttattgcagcctgaggcactatctagaagggttaagagggagccagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agaggctaggaagttattgcagcctgaggcactatctagaagggttaagagggagccagg 592
Query: 301 taagtcagggtatagtgagtttccattgcgagcmattgacatgagagataaagamaacgt 360
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 591 taagtcagggtatagtgagtttccattgcgagcaattgacatgagagataaagaaaacgt 532
Query: 361 taagacgaatttggtcaaatttcagtctaagamaccaatagaccctgaggatttccattt 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 531 taagacgaatttggtcaaatttcagtctaagaaaccaatagaccctgaggatttccattt 472
Query: 421 acccatcagattacatcgtaaggmtactagamacttgcaattccagttgaccagagcgga 480
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 471 acccatcagattacatcgtaaggatactagaaacttgcaattccagttgaccagagcgga 412
Query: 481 aattgtgcaaagacagaaggaaattgcggaattcaagcagagacaactcgaagaagcagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aattgtgcaaagacagaaggaaattgcggaattcaagcagagacaactcgaagaagcagg 352
Query: 541 aggtgcaggaccgggtactggcggtagcaactcaacgccgacagcatctaamggtaacag 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 351 aggtgcaggaccgggtactggcggtagcaactcaacgccgacagcatctaaaggtaacag 292
Query: 601 tactggtggaagtttctctcaatctaacgggaaaccatataatagcmaacmaggaacgcc 660
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 291 tactggtggaagtttctctcaatctaacgggaaaccatataatagcaaacaaggaacgcc 232
Query: 661 agtt-caggtacgttg-aatggtccaaaagtgggagtaactaattatwatawtacagatg 718
|||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 231 agttccaggtacgttgaaatggtccaaaagtgggagtaactaattataataatacagatg 172
Query: 719 gtcctaacgtgaataataacggttcatcaagttcagagctgaaaactggcacagattccg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gtcctaacgtgaataataacggttcatcaagttcagagctgaaaactggcacagattccg 112
Query: 779 gctctcctccaaatgggaaagaaggaactcccagcaataccgtcactatccttgaagagg 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gctctcctccaaatgggaaagaaggaactcccagcaataccgtcactatccttgaagagg 52
Query: 839 c-tggagtggcagaagacccaact-aaggtcggtatggtt 876
| ||| |||||||||||||||||| |||||||||||||||
Sbjct: 51 cttggtgtggcagaagacccaactaaaggtcggtatggtt 12
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5211
Number of Sequences: 1807
Number of extensions: 5211
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 1075
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1059
effective length of database: 10,329,639
effective search space: 10939087701
effective search space used: 10939087701
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.5 bits)
S2: 50 (100.7 bits)